PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29908.m006159
Common NameLOC8274094, RCOM_1031630
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family GRAS
Protein Properties Length: 491aa    MW: 54282.8 Da    PI: 5.9844
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29908.m006159genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS332.76.8e-1021024831374
           GRAS   1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykal....ppsetseknsseelaalklfsevsP 89 
                    l++lL+++Aea++  +++  la+ +L rl+el+sp++ ++m+Rlaayft AL+  l ++++++ + +    p ++ ++++++++laa++l++++sP
  29908.m006159 102 LIHLLMAAAEALTGVNKSreLARVILVRLKELVSPNDgTNMERLAAYFTDALQGLLEGHGTSTKHLIhnsgPYQHHHHHHQADTLAAFQLLQDMSP 197
                    689**********85554449***********8887669******************977666655521123444444459*************** PP

           GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg...skeeleetgerLakfAeelgvpfefnv 180
                    ++kf+h+taNqaIleav++++r+Hi+D+di++G+QW++L+q+L sR++gpp  +lRiT++++  ++   s  +++etg+rL  fA+++g pf+f+ 
  29908.m006159 198 YVKFGHFTANQAILEAVSQDKRIHIVDYDIMEGIQWASLMQSLVSRKDGPPtpHLRITALSRGGNSgkrSIGTVQETGRRLVAFAASIGQPFSFHH 293
                    ***********************************************776556********977777889999*********************** PP

           GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleakl 275
                       ++ e++++++L++ +gEal+ n++l+l ++  +  ++     ++L+  k+lsP++v++ve+e+   +++ F+ rf+++l++ysal+dslea++
  29908.m006159 294 CRLDSDESFRPSALKLVRGEALIMNCMLHLPHFSYRAPDSV---ASFLSGSKTLSPRLVTLVEEEVGPvGDGGFVGRFMDSLYHYSALYDSLEAGF 386
                    9999****************************985555555...59*******************9988*************************** PP

           GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvsv 370
                    p +s++r+ vEr++lg++i   +    +      e+ ++W e+ + aGF+pv++s  + +qaklll  ++ dgyrvee   + lvl Wk+r+L+s+
  29908.m006159 387 PMQSRARALVERVFLGPRIAGSLDRIYRG--YGDEEGSSWGEWSSGAGFRPVNISFANHCQAKLLLGLFN-DGYRVEELgCNRLVLSWKSRRLLSA 479
                    *********************99988877..7778899********************************.******99579999*********** PP

           GRAS 371 SaWr 374
                    S W+
  29908.m006159 480 SIWT 483
                    ***6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098551.65476463IPR005202Transcription factor GRAS
PfamPF035142.3E-99102483IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MAMAIDGSFE LDFSGCSTTT TSSTENDHDR ACNWNDWSPL VDWEALSAHH DDFQDLIESM  60
MEDGGLHQNH ETCNSNPNSP SSTDTMAIDE ETSGEDFKGL RLIHLLMAAA EALTGVNKSR  120
ELARVILVRL KELVSPNDGT NMERLAAYFT DALQGLLEGH GTSTKHLIHN SGPYQHHHHH  180
HQADTLAAFQ LLQDMSPYVK FGHFTANQAI LEAVSQDKRI HIVDYDIMEG IQWASLMQSL  240
VSRKDGPPTP HLRITALSRG GNSGKRSIGT VQETGRRLVA FAASIGQPFS FHHCRLDSDE  300
SFRPSALKLV RGEALIMNCM LHLPHFSYRA PDSVASFLSG SKTLSPRLVT LVEEEVGPVG  360
DGGFVGRFMD SLYHYSALYD SLEAGFPMQS RARALVERVF LGPRIAGSLD RIYRGYGDEE  420
GSSWGEWSSG AGFRPVNISF ANHCQAKLLL GLFNDGYRVE ELGCNRLVLS WKSRRLLSAS  480
IWTSPSSDCD L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-4813948237374GRAS family transcription factor containing p
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002513781.10.0PREDICTED: nodulation-signaling pathway 2 protein
SwissprotQ5NE240.0NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLB9RJ620.0B9RJ62_RICCO; Nodulation signaling pathway 2 protein, putative
STRINGPOPTR_0005s15900.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62643152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-159GRAS family protein